I have had this same problem with two different sets of Zeiss high-speeds on the red. The 18mm always wants a different back-focus than the tighter lenses.
I read somewhere on reduser that the protective glass in front of the sensor adds a slight bit of refraction, which particularly affects the wide lenses because they have a shallow back-focus. Does this add to up to everyone else? This is the theory I am currently going with. There is no protective glass in front of the gate on normal 35mm Cameras, so I am assuming that is why few people have considered this issue.